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RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818063, updated on 18-Sep-2024

Summary

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Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT2G34990
Locus tag
AT2G34990
See related
Araport:AT2G34990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F19I3.22; F19I3_22
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (14750156..14751326, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene phosphatidylinositolglycan synthase family protein Neighboring gene tRNA-Thr Neighboring gene RING/U-box superfamily protein Neighboring gene thioredoxin O1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001336536.1
NM_129051.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/U-box superfamily protein
NP_181044.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G35000.1); Has 8449 Blast hits to 8424 proteins in 270 species: Archae - 0; Bacteria - 2; Metazoa - 2244; Fungi - 529; Plants - 4596; Viruses - 25; Other Eukaryotes - 1053 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14750156..14751326 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129051.2 → NP_181044.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O64762, Q4PSR9
    UniProtKB/TrEMBL
    A0A5S9X463
    Conserved Domains (1) summary
    pfam13639
    Location:95 → 138
    zf-RING_2; Ring finger domain

  2. NM_001336536.1 → NP_001323608.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VMT5, A0A1P8AXK1, A0A384KHB5, A0A5S9X463
    Conserved Domains (1) summary
    cd16454
    Location:117 → 160
    RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O64762.1

Gene LinkOut

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