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FLA16 FASCICLIN-like arabinogalactan protein 16 precursor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818159, updated on 18-Sep-2024

Summary

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Official Symbol
FLA16
Official Full Name
FASCICLIN-like arabinogalactan protein 16 precursor
Primary source
TAIR:AT2G35860
Locus tag
AT2G35860
See related
Araport:AT2G35860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F11F19.23; F11F19_23; FASCICLIN-like arabinogalactan protein 16 precursor
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Genomic context

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See FLA16 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (15059763..15062122)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ureidoglycolate hydrolase Neighboring gene ureidoglycolate hydrolase Neighboring gene Sucrose-6F-phosphate phosphohydrolase family protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene TPX2 (targeting protein for Xklp2) protein family Neighboring gene ncRNA Neighboring gene calcium-dependent protein kinase 25

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interactome analysis reveals versatile functions of Arabidopsis COLD SHOCK DOMAIN PROTEIN 3 in RNA processing within the nucleus and cytoplasm. Kim MH, et al. Cell Stress Chaperones, 2013 Jul. PMID 23334891, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_179922.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
FASCICLIN-like arabinogalactan protein 16 precursor
NP_850253.1
  • FASCICLIN-like arabinogalactan protein 16 precursor (FLA16); INVOLVED IN: cell adhesion; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 15 precursor (TAIR:AT3G52370.1); Has 1005 Blast hits to 970 proteins in 256 species: Archae - 17; Bacteria - 426; Metazoa - 148; Fungi - 43; Plants - 238; Viruses - 1; Other Eukaryotes - 132 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    15059763..15062122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179922.2 → NP_850253.1  FASCICLIN-like arabinogalactan protein 16 precursor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850253.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RWC5, Q9SJ64
    UniProtKB/TrEMBL
    A0A178VR39, A0A5S9X4A7
    Conserved Domains (3) summary
    smart00554
    Location:298 → 403
    FAS1; Four repeated domains in the Fasciclin I family of proteins, present in many other contexts
    pfam02469
    Location:46 → 175
    Fasciclin; Fasciclin domain
    cl02663
    Location:252 → 331
    Fasciclin; Fasciclin domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8RWC5.1

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