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pentatricopeptide (PPR) repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818196, updated on 18-Sep-2024

Summary

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Official Full Name
pentatricopeptide (PPR) repeat-containing protein
Primary source
TAIR:AT2G36240
Locus tag
AT2G36240
See related
Araport:AT2G36240
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2H17.15; F2H17_15
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (15195608..15197332)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene Tubulin/FtsZ family protein Neighboring gene Defensin-like (DEFL) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_129182.6

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
pentatricopeptide (PPR) repeat-containing protein
NP_181166.3
  • pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1); Has 43076 Blast hits to 12816 proteins in 267 species: Archae - 3; Bacteria - 25; Metazoa - 283; Fungi - 440; Plants - 41291; Viruses - 2; Other Eukaryotes - 1032 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    15195608..15197332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129182.6 → NP_181166.3  pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181166.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WVA7, Q6ICY0, Q9SJN2
    Conserved Domains (5) summary
    TIGR00756
    Location:229 → 263
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:195 → 222
    PPR; PPR repeat [structural motif]
    pfam12854
    Location:257 → 289
    PPR_1; PPR repeat
    pfam13041
    Location:226 → 273
    PPR_2; PPR repeat family
    cl03252
    Location:432 → 464
    PPR; PPR repeat
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SJN2.1

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