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TBL15 TRICHOME BIREFRINGENCE-LIKE 15 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818349, updated on 18-Sep-2024

Summary

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Official Symbol
TBL15
Official Full Name
TRICHOME BIREFRINGENCE-LIKE 15
Primary source
TAIR:AT2G37720
Locus tag
AT2G37720
See related
Araport:AT2G37720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13M22.22; F13M22_22; TRICHOME BIREFRINGENCE-LIKE 15
Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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Genomic context

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See TBL15 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (15818082..15821311)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase Neighboring gene Fatty acid hydroxylase superfamily Neighboring gene receptor lectin kinase Neighboring gene ncRNA Neighboring gene glycosyltransferase (DUF604)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_129328.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 

General protein information

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Preferred Names
TRICHOME BIREFRINGENCE-LIKE 15
NP_181308.1
  • TRICHOME BIREFRINGENCE-LIKE 15 (TBL15); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: leaf; EXPRESSED DURING: LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 14 (TAIR:AT5G64020.1); Has 1325 Blast hits to 1306 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1323; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    15818082..15821311
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129328.3 → NP_181308.1  TRICHOME BIREFRINGENCE-LIKE 15 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181308.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80940
    UniProtKB/TrEMBL
    A0A178VTW8
    Conserved Domains (2) summary
    pfam13839
    Location:196 → 482
    PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
    pfam14416
    Location:142 → 195
    PMR5N; PMR5 N terminal Domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O80940.1

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