U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818423, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
TAIR:AT2G38420
Locus tag
AT2G38420
See related
Araport:AT2G38420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T19C21.9; T19C21_9
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (16091030..16092681)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene alanine:glyoxylate aminotransferase 3 Neighboring gene ENTH/VHS/GAT family protein Neighboring gene uncharacterized protein Neighboring gene SCAR homolog 2 Neighboring gene Sel1 repeat protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_129398.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_181376.3
  • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G63130.1); Has 26299 Blast hits to 8886 proteins in 261 species: Archae - 3; Bacteria - 26; Metazoa - 362; Fungi - 517; Plants - 24480; Viruses - 0; Other Eukaryotes - 911 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16091030..16092681
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129398.4 → NP_181376.3  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181376.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80909, Q8L6Y7
    UniProtKB/TrEMBL
    A0A178VTY6
    Conserved Domains (3) summary
    sd00004
    Location:323 → 350
    PPR; PPR repeat [structural motif]
    pfam12854
    Location:351 → 383
    PPR_1; PPR repeat
    pfam13041
    Location:319 → 368
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L6Y7.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools