U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

APC7 tetratricopeptide repeat (TPR)-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818495, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
APC7
Official Full Name
tetratricopeptide repeat (TPR)-containing protein
Primary source
TAIR:AT2G39090
Locus tag
AT2G39090
See related
Araport:AT2G39090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
anaphase-promoting complex 7; AtAPC7; T7F6.26; T7F6_26
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See APC7 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
18
Sequence:
Chromosome: 2; NC_003071.7 (16312657..16317390, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Nodulin MtN3 family protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene RING/U-box superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene Ubiquitin carboxyl-terminal hydrolase family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_001036436.1
NM_179978.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
tetratricopeptide repeat (TPR)-containing protein
NP_001031513.1
  • tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: anaphase-promoting complex subunit 8 (TAIR:AT3G48150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_850309.1
  • tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: anaphase-promoting complex subunit 8 (TAIR:AT3G48150.1); Has 3516 Blast hits to 3050 proteins in 660 species: Archae - 166; Bacteria - 1649; Metazoa - 603; Fungi - 202; Plants - 185; Viruses - 0; Other Eukaryotes - 711 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16312657..16317390 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179978.3 → NP_850309.1  tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850309.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z2F9, Q2V418, Q8VY89, Q9ZUZ9
    UniProtKB/TrEMBL
    A0A178VSZ9, A0A178VUL0, A0A5S9X5E1
    Conserved Domains (2) summary
    TIGR02917
    Location:230 → 536
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:448 → 477
    TPR; TPR repeat [structural motif]

  2. NM_001036436.1 → NP_001031513.1  tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031513.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VUL0
    Conserved Domains (2) summary
    TIGR02917
    Location:225 → 510
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:448 → 477
    TPR; TPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VY89.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools