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JAL23 jacalin-related lectin 23 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818518, updated on 18-Sep-2024

Summary

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Official Symbol
JAL23
Official Full Name
jacalin-related lectin 23
Primary source
TAIR:AT2G39330
Locus tag
AT2G39330
See related
Araport:AT2G39330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
jacalin-related lectin 23; T16B24.3; T16B24_3
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Genomic context

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See JAL23 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (16419483..16422158, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene jacalin-related lectin 22 Neighboring gene Cysteine proteinases superfamily protein Neighboring gene SAC3/GANP/Nin1/mts3/eIF-3 p25 family Neighboring gene ncRNA Neighboring gene ABC-2 type transporter family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Post-transcriptional control of GRF transcription factors by microRNA miR396 and GIF co-activator affects leaf size and longevity. Debernardi JM, et al. Plant J, 2014 Aug. PMID 24888433
  2. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  3. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
  4. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001336766.1
NM_001336767.1
NM_129490.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in plant-type vacuole HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
jacalin-related lectin 23
NP_001318382.1
  • jacalin-related lectin 23 (JAL23); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin-related lectin 22 (TAIR:AT2G39310.3); Has 1977 Blast hits to 736 proteins in 44 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 4; Plants - 1953; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16419483..16422158 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336766.1 → NP_001318382.1  jacalin-related lectin 23 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80948, Q8W4Q6
    UniProtKB/TrEMBL
    A0A178VSZ1, A0A5S9X5C7, A0A654F1J0
    Conserved Domains (1) summary
    pfam01419
    Location:323 → 454
    Jacalin; Jacalin-like lectin domain

  2. NM_001336767.1 → NP_001323546.1  jacalin-related lectin 23 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VSZ1, A0A1P8AXC4, A0A5S9X5C7, A0A654F1J0

  3. NM_129490.4 → NP_181465.1  jacalin-related lectin 23 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181465.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80948, Q8W4Q6
    UniProtKB/TrEMBL
    A0A178VSZ1, A0A5S9X5C7, A0A654F1J0
    Conserved Domains (1) summary
    pfam01419
    Location:323 → 454
    Jacalin; Jacalin-like lectin domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O80948.1

Gene LinkOut

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