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Yippee family putative zinc-binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818600, updated on 18-Sep-2024

Summary

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Official Full Name
Yippee family putative zinc-binding protein
Primary source
TAIR:AT2G40110
Locus tag
AT2G40110
See related
Araport:AT2G40110
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F27I1.3; F27I1_3
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (16747831..16749590)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Alpha/beta hydrolase related protein Neighboring gene light harvesting complex photosystem II Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene Phosphoinositide-specific phospholipase C family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001336823.1
NM_129569.5
NM_201916.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Yippee family putative zinc-binding protein
NP_181540.1
  • Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT3G11230.2); Has 989 Blast hits to 989 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 470; Fungi - 205; Plants - 239; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
NP_973645.1
  • Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT3G08990.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16747831..16749590
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336822.1 → NP_001324481.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B0A7

  2. NM_129569.5 → NP_181540.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181540.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VZP1, Q8LE51
    Conserved Domains (1) summary
    cl13152
    Location:13 → 106
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains

  3. NM_001336823.1 → NP_001324480.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B0A7

  4. NM_201916.2 → NP_973645.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973645.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IGY8
    Conserved Domains (1) summary
    cl13152
    Location:13 → 101
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
Nucleotide Protein
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