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LBD15 LOB domain-containing protein 15 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818641, updated on 18-Sep-2024

Summary

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Official Symbol
LBD15
Official Full Name
LOB domain-containing protein 15
Primary source
TAIR:AT2G40470
Locus tag
AT2G40470
See related
Araport:AT2G40470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ASL11; ASYMMETRIC LEAVES2-LIKE 11; LOB domain-containing protein 15; T2P4.18; T2P4_18
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Genomic context

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See LBD15 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (16902038..16904032, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Major facilitator superfamily protein Neighboring gene uncharacterized protein Neighboring gene WEB family protein (DUF827)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Using high competent shoot apical meristems of cockscomb as explants for studying function of ASYMMETRIC LEAVES2-LIKE11 (ASL11) gene of Arabidopsis. Sun SB, et al. Mol Biol Rep, 2010 Dec. PMID 20306306
  2. The Arabidopsis transcription factor LBD15 mediates ABA signaling and tolerance of water-deficit stress by regulating ABI4 expression. Guo Z, et al. Plant J, 2020 Oct. PMID 32744432
  3. LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Ohashi-Ito K, et al. Plant Cell Physiol, 2018 May 1. PMID 29444288
  4. Arabidopsis ASL11/LBD15 is involved in shoot apical meristem development and regulates WUS expression. Sun X, et al. Planta, 2013 May. PMID 23397191
  5. Proteomic profiling of tandem affinity purified 14-3-3 protein complexes in Arabidopsis thaliana. Chang IF, et al. Proteomics, 2009 Jun. PMID 19452453, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The Arabidopsis transcription factor LBD15 mediates ABA signaling and tolerance of water-deficit stress by regulating ABI4 expression.
    Title: The Arabidopsis transcription factor LBD15 mediates ABA signaling and tolerance of water-deficit stress by regulating ABI4 expression.
  2. AtGLR3.4-mediated Ca2+ influx may be involved in the regulation of seed germination under salt stress
    Title: LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
  3. Results suggest that ASL11/LBD15 affects cellular differentiation in the SAM and regulates WUS expression.
    Title: Arabidopsis ASL11/LBD15 is involved in shoot apical meristem development and regulates WUS expression.
  4. ASL11 might be involved in sustaining indeterminate cell fate of shoot apical meristems. [ASL11]
    Title: Using high competent shoot apical meristems of cockscomb as explants for studying function of ASYMMETRIC LEAVES2-LIKE11 (ASL11) gene of Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001336841.1
NM_129608.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of gene expression IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within tracheary element differentiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
LOB domain-containing protein 15
NP_565933.1
  • LOB domain-containing protein 15 (LBD15); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 13 (TAIR:AT2G30340.1); Has 1010 Blast hits to 1005 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 1006; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16902038..16904032 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129608.3 → NP_565933.1  LOB domain-containing protein 15 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565933.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0MES9, B7XG65, O22888, Q1PEV4, Q8L5T5
    UniProtKB/TrEMBL
    A0A178VSB7, A0A5S9X5Q8, A0A7G2EH29
    Conserved Domains (1) summary
    pfam03195
    Location:45 → 125
    LOB; Lateral organ boundaries (LOB) domain

  2. NM_001336841.1 → NP_001324899.1  LOB domain-containing protein 15 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B1I4, A0A7G2EH29
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L5T5.2

Gene LinkOut

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