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RNA-binding (RRM/RBD/RNP motifs) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818705, updated on 18-Sep-2024

Summary

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Official Full Name
RNA-binding (RRM/RBD/RNP motifs) family protein
Primary source
TAIR:AT2G41060
Locus tag
AT2G41060
See related
Araport:AT2G41060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T3K9.17; T3K9_17
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (17126989..17130569)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene WW domain-containing protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene PQ-loop repeat family protein / transmembrane family protein Neighboring gene ncRNA Neighboring gene Basic-leucine zipper (bZIP) transcription factor family protein Neighboring gene pentatricopeptide (PPR) repeat protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Overexpression of wound-responsive RNA-binding proteins induces leaf senescence and hypersensitive-like cell death. Kim CY, et al. New Phytol, 2008. PMID 18705666
  2. Characterization of wound-responsive RNA-binding proteins and their splice variants in Arabidopsis. Bove J, et al. Plant Mol Biol, 2008 May. PMID 18278441
  3. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. UBA2 gene expression stimulates leaf yellowing and cell death phenotypes through senescence and defense response pathways.
    Title: Overexpression of wound-responsive RNA-binding proteins induces leaf senescence and hypersensitive-like cell death.
  2. UBA2B (AT2G41060) encodes an hnRNP-type nuclear RNA-binding protein that functions in a novel wound signal transduction pathway.
    Title: Characterization of wound-responsive RNA-binding proteins and their splice variants in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001084566.2
NM_001336889.1
NM_129671.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within defense response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within ethylene biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within leaf senescence IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within programmed cell death IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding (RRM/RBD/RNP motifs) family protein
NP_001318398.1
  • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: leaf senescence, cell death, ethylene biosynthetic process, defense response; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: UBP1-associated protein 2A (TAIR:AT3G56860.5); Has 20258 Blast hits to 14290 proteins in 711 species: Archae - 0; Bacteria - 976; Metazoa - 9998; Fungi - 2289; Plants - 4483; Viruses - 115; Other Eukaryotes - 2397 (source: NCBI BLink).
NP_181639.1
  • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: leaf senescence, cell death, ethylene biosynthetic process, defense response; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: UBP1-associated protein 2A (TAIR:AT3G56860.5); Has 20258 Blast hits to 14290 proteins in 711 species: Archae - 0; Bacteria - 976; Metazoa - 9998; Fungi - 2289; Plants - 4483; Viruses - 115; Other Eukaryotes - 2397 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    17126989..17130569
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129671.4 → NP_181639.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181639.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80678
    UniProtKB/TrEMBL
    A0A178VQQ9, A0A5S9X5W9
    Conserved Domains (2) summary
    cd12384
    Location:227 → 302
    RRM_RBM24_RBM38_like; RNA recognition motif in eukaryotic RNA-binding protein RBM24, RBM38 and similar proteins
    cl17169
    Location:128 → 203
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. NM_001084566.2 → NP_001078035.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078035.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80678
    UniProtKB/TrEMBL
    A0A178VQQ9, A0A5S9X5W9
    Conserved Domains (2) summary
    cd12384
    Location:227 → 302
    RRM_RBM24_RBM38_like; RNA recognition motif in eukaryotic RNA-binding protein RBM24, RBM38 and similar proteins
    cl17169
    Location:128 → 203
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. NM_001336889.1 → NP_001318398.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80678
    UniProtKB/TrEMBL
    A0A178VQQ9, A0A5S9X5W9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O80678.1

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