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RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818803, updated on 18-Sep-2024

Summary

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Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT2G42030
Locus tag
AT2G42030
See related
Araport:AT2G42030
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6D20.8; T6D20_8
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (17538864..17541245, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene phospholipase D beta 1 Neighboring gene tRNA-Ser Neighboring gene WRC protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Individual components of paired typical NLR immune receptors are regulated by distinct E3 ligases. Dong OX, et al. Nat Plants, 2018 Sep. PMID 30082764
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_129766.3

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/U-box superfamily protein
NP_181733.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G58030.4); Has 5667 Blast hits to 5631 proteins in 406 species: Archae - 0; Bacteria - 6; Metazoa - 3361; Fungi - 638; Plants - 1015; Viruses - 19; Other Eukaryotes - 628 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    17538864..17541245 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129766.3 → NP_181733.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181733.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VX87, P93744
    Conserved Domains (2) summary
    PLN03208
    Location:124 → 214
    PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
    cd16745
    Location:139 → 182
    RING-HC_AtRMA_like; RING finger, HC subclass, found in Arabidopsis thaliana RING membrane-anchor proteins (AtRMAs) and similar proteins
Nucleotide Protein
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