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survival motor neuron interacting protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818851, updated on 18-Sep-2024

Summary

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Official Full Name
survival motor neuron interacting protein
Primary source
TAIR:AT2G42510
Locus tag
AT2G42510
See related
Araport:AT2G42510
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14N22.22; F14N22_22
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (17701381..17704690)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Copper amine oxidase family protein Neighboring gene protein phosphatase 2A-3 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene cold regulated 15b Neighboring gene cold-regulated 15a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001161098.1
NM_001336980.1
NM_129812.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
survival motor neuron interacting protein
NP_001154570.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1); Has 297 Blast hits to 270 proteins in 80 species: Archae - 2; Bacteria - 35; Metazoa - 62; Fungi - 11; Plants - 64; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
NP_001318407.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1); Has 229 Blast hits to 211 proteins in 63 species: Archae - 4; Bacteria - 35; Metazoa - 50; Fungi - 9; Plants - 20; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
NP_181779.4
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1); Has 358 Blast hits to 335 proteins in 89 species: Archae - 4; Bacteria - 46; Metazoa - 66; Fungi - 14; Plants - 57; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    17701381..17704690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336981.1 → NP_001325022.1  survival motor neuron interacting protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VUY2, A0A1P8B1W9

  2. NM_001336982.1 → NP_001325020.1  survival motor neuron interacting protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VVG7, A0A1P8B1V8

  3. NM_001336983.1 → NP_001325021.1  survival motor neuron interacting protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VUY2, A0A1P8B1W4

  4. NM_001161098.1 → NP_001154570.1  survival motor neuron interacting protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154570.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F2H4, F4IN39
    Conserved Domains (1) summary
    pfam04938
    Location:454 → 614
    SIP1; Survival motor neuron (SMN) interacting protein 1 (SIP1)

  5. NM_129812.5 → NP_181779.4  survival motor neuron interacting protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181779.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EFN9, F4IN40
    Conserved Domains (1) summary
    pfam04938
    Location:436 → 499
    SIP1; Survival motor neuron (SMN) interacting protein 1 (SIP1)

  6. NM_001336980.1 → NP_001318407.1  survival motor neuron interacting protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VVG7, F4IN41
Nucleotide Protein
Heading Accession and Version

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