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vesicle docking protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818870, updated on 18-Sep-2024

Summary

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Official Full Name
vesicle docking protein
Primary source
TAIR:AT2G42700
Locus tag
AT2G42700
See related
Araport:AT2G42700
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14N22.4; MAG2-interacting protein 3; MIP3
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (17778130..17782188)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene multiprotein bridging factor 1A Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene Ribosomal protein L1p/L10e family Neighboring gene FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An ER-Golgi Tethering Factor SLOH4/MIP3 Is Involved in Long-Term Heat Tolerance of Arabidopsis. Isono K, et al. Plant Cell Physiol, 2021 May 11. PMID 33367686
  2. Misregulation of ER-Golgi Vesicle Transport Induces ER Stress and Affects Seed Vigor and Stress Response. Zhao X, et al. Front Plant Sci, 2018. PMID 29868102, Free PMC Article
  3. MAG2 and three MAG2-INTERACTING PROTEINs form an ER-localized complex to facilitate storage protein transport in Arabidopsis thaliana. Li L, et al. Plant J, 2013 Dec. PMID 24118572
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. An ER-Golgi Tethering Factor SLOH4/MIP3 Is Involved in Long-Term Heat Tolerance of Arabidopsis.
    Title: An ER-Golgi Tethering Factor SLOH4/MIP3 Is Involved in Long-Term Heat Tolerance of Arabidopsis.
  2. MAG2 and the three MIP proteins (MIP1, MIP2, MIP3) form a unique complex on the ER that is responsible for efficient transport of seed storage proteins.
    Title: MAG2 and three MAG2-INTERACTING PROTEINs form an ER-localized complex to facilitate storage protein transport in Arabidopsis thaliana.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001202805.1
NM_001336992.1
NM_129831.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within endoplasmic reticulum to Golgi vesicle-mediated transport IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within protein exit from endoplasmic reticulum IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within protein maturation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in protein maturation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in vacuolar protein processing TAS
Traceable Author Statement
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
vesicle docking protein
NP_001189734.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619).
NP_181798.2
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    17778130..17782188
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129831.5 → NP_181798.2  vesicle docking protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181798.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IP69, Q9SJI6
    UniProtKB/TrEMBL
    A0A178VXX9, A0A5S9X6N9
    Conserved Domains (1) summary
    cl15415
    Location:684 → 824
    Sec1; Sec1 family

  2. NM_001202805.1 → NP_001189734.1  vesicle docking protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189734.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IP68

  3. NM_001336992.1 → NP_001323776.1  vesicle docking protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AY33
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4IP69.1

Gene LinkOut

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