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Ribosomal protein L1p/L10e family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818871, updated on 18-Sep-2024

Summary

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Official Full Name
Ribosomal protein L1p/L10e family
Primary source
TAIR:AT2G42710
Locus tag
AT2G42710
See related
Araport:AT2G42710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14N22.3
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Genomic context

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Location:
chromosome: 2
Exon count:
10
Sequence:
Chromosome: 2; NC_003071.7 (17782308..17785090)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene vesicle docking protein Neighboring gene FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein Neighboring gene transcription factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_180044.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
part_of large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Ribosomal protein L1p/L10e family
NP_850375.1
  • Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, bacterial-type (InterPro:IPR005878), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT3G63490.1); Has 9261 Blast hits to 9236 proteins in 2822 species: Archae - 147; Bacteria - 5388; Metazoa - 398; Fungi - 257; Plants - 180; Viruses - 2; Other Eukaryotes - 2889 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    17782308..17785090
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180044.2 → NP_850375.1  Ribosomal protein L1p/L10e family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850375.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VQC0, A0A654F199, Q8RWT4
    Conserved Domains (1) summary
    PRK05424
    Location:181 → 403
    rplA; 50S ribosomal protein L1; Validated
Nucleotide Protein
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