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RNA-binding (RRM/RBD/RNP motifs) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819079, updated on 18-Sep-2024

Summary

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Official Full Name
RNA-binding (RRM/RBD/RNP motifs) family protein
Primary source
TAIR:AT2G44710
Locus tag
AT2G44710
See related
Araport:AT2G44710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F16B22.20
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Genomic context

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Location:
chromosome: 2
Exon count:
12
Sequence:
Chromosome: 2; NC_003071.7 (18432686..18437221)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RAC-like 9 Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Alcohol dehydrogenase transcription factor Myb/SANT-like family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phase separation of HRLP regulates flowering time in Arabidopsis. Zhang Y, et al. Sci Adv, 2022 Jun 24. PMID 35731874, Free PMC Article
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001337094.1
NM_001337095.1
NM_001337096.1
NM_180091.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNA-binding (RRM/RBD/RNP motifs) family protein
NP_850422.1
  • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G00830.2); Has 31429 Blast hits to 23398 proteins in 2969 species: Archae - 812; Bacteria - 21040; Metazoa - 874; Fungi - 1027; Plants - 329; Viruses - 0; Other Eukaryotes - 7347 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    18432686..18437221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180091.2 → NP_850422.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850422.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q0WLB4, Q8RWQ1
    Conserved Domains (2) summary
    smart00360
    Location:216 → 287
    RRM; RNA recognition motif
    cd00590
    Location:296 → 358
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. NM_001337094.1 → NP_001324821.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q0WLB4, Q8RWQ1

  3. NM_001337095.1 → NP_001324820.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B196

  4. NM_001337096.1 → NP_001324822.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B1B8, Q0WLB4
Nucleotide Protein
Heading Accession and Version

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