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UBC6 ubiquitin-conjugating enzyme 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819211, updated on 18-Sep-2024

Summary

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Official Symbol
UBC6
Official Full Name
ubiquitin-conjugating enzyme 6
Primary source
TAIR:AT2G46030
Locus tag
AT2G46030
See related
Araport:AT2G46030
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T3F17.32; ubiquitin-conjugating enzyme 6
Summary
Ubiquitin conjugating enzyme E2
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Genomic context

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See UBC6 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (18932019..18934138, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ribosomal RNA small subunit methyltransferase G Neighboring gene ncRNA Neighboring gene LDL receptor wingless signaling/trafficking chaperone Neighboring gene transcription regulatory protein SNF2 Neighboring gene ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. UBC6, a ubiquitin-conjugating enzyme, participates in secondary cell wall thickening in the inflorescence stem of Arabidopsis. Wang Q, et al. Plant Physiol Biochem, 2023 Dec. PMID 37944242
  2. Floral expression of a gene encoding an E2-related ubiquitin-conjugating protein from Arabidopsis thaliana. Watts FZ, et al. Plant Mol Biol, 1994 Oct. PMID 7948890
  3. Arabidopsis Ubiquitin-Conjugating Enzymes UBC4, UBC5, and UBC6 Have Major Functions in Sugar Metabolism and Leaf Senescence. Wang S, et al. Int J Mol Sci, 2022 Sep 22. PMID 36232444, Free PMC Article
  4. Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. Kraft E, et al. Plant Physiol, 2005 Dec. PMID 16339806, Free PMC Article
  5. Protein degradation in signaling. Callis J, et al. Curr Opin Plant Biol, 2000 Oct. PMID 11019805

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. UBC6, a ubiquitin-conjugating enzyme, participates in secondary cell wall thickening in the inflorescence stem of Arabidopsis.
    Title: UBC6, a ubiquitin-conjugating enzyme, participates in secondary cell wall thickening in the inflorescence stem of Arabidopsis.
  2. Arabidopsis Ubiquitin-Conjugating Enzymes UBC4, UBC5, and UBC6 Have Major Functions in Sugar Metabolism and Leaf Senescence.
    Title: Arabidopsis Ubiquitin-Conjugating Enzymes UBC4, UBC5, and UBC6 Have Major Functions in Sugar Metabolism and Leaf Senescence.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001337170.1
NM_001337171.1
NM_001337173.1
NM_130166.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme activity IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-protein transferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables ubiquitin-protein transferase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ubiquitin-conjugating enzyme 6
NP_001318433.1
  • ubiquitin-conjugating enzyme 6 (UBC6); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Ubiquitin-conjugating enzyme (InterPro:IPR015581); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 5 (TAIR:AT1G63800.1); Has 8701 Blast hits to 8700 proteins in 389 species: Archae - 0; Bacteria - 2; Metazoa - 3940; Fungi - 1759; Plants - 1590; Viruses - 20; Other Eukaryotes - 1390 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    18932019..18934138 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001337172.1 → NP_001324871.1  ubiquitin-conjugating enzyme 6 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W0M8, A0A1P8B1E8

  2. NM_001337170.1 → NP_001318433.1  ubiquitin-conjugating enzyme 6 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49739, O82365, P42750, Q4TZ03
    UniProtKB/TrEMBL
    A0A178W274, A0A5S9X7M5
    Conserved Domains (1) summary
    pfam00179
    Location:7 → 143
    UQ_con; Ubiquitin-conjugating enzyme

  3. NM_001337171.1 → NP_001324870.1  ubiquitin-conjugating enzyme 6 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W274, A0A1P8B1K4

  4. NM_130166.4 → NP_566062.1  ubiquitin-conjugating enzyme 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566062.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49739, O82365, P42750, Q4TZ03
    UniProtKB/TrEMBL
    A0A178W274, A0A5S9X7M5
    Conserved Domains (1) summary
    pfam00179
    Location:7 → 143
    UQ_con; Ubiquitin-conjugating enzyme

  5. NM_001337173.1 → NP_001324869.1  ubiquitin-conjugating enzyme 6 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W274, A0A1P8B1K4
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
AAB32508.1
P42750.2

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