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transcription factor-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819303, updated on 18-Sep-2024

Summary

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Official Full Name
transcription factor-like protein
Primary source
TAIR:AT2G46900
Locus tag
AT2G46900
See related
Araport:AT2G46900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14M4.27
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Genomic context

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Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (19269558..19272263)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene purple acid phosphatase 14 Neighboring gene 3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) Neighboring gene Plastid-lipid associated protein PAP / fibrillin family protein Neighboring gene DUF3754 family protein, putative (DUF3754) Neighboring gene Protein phosphatase 2C family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_130257.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transcription factor-like protein
NP_566090.1
  • CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to 2464 proteins in 333 species: Archae - 2; Bacteria - 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47; Other Eukaryotes - 1303 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    19269558..19272263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_130257.5 → NP_566090.1  transcription factor-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566090.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VSX5, A0A654F3Y1, O80734
    Conserved Domains (1) summary
    pfam04910
    Location:226 → 553
    Tcf25; Transcriptional repressor TCF25
Nucleotide Protein
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