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DIM1A Ribosomal RNA adenine dimethylase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819355, updated on 18-Sep-2024

Summary

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Official Symbol
DIM1A
Official Full Name
Ribosomal RNA adenine dimethylase family protein
Primary source
TAIR:AT2G47420
Locus tag
AT2G47420
See related
Araport:AT2G47420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
adenosine dimethyl transferase 1A; T30B22.28
Summary
Encodes a putative rRNA dimethyltransferase.
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Genomic context

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See DIM1A in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (19457374..19458924)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene CP12 domain-containing protein 1 Neighboring gene WD40 domain-containing protein Neighboring gene Signal transduction histidine kinase Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A mitochondrial rRNA dimethyladenosine methyltransferase in Arabidopsis. Richter U, et al. Plant J, 2010 Feb. PMID 19929881, Free PMC Article
  2. Nuclear ribosome biogenesis mediated by the DIM1A rRNA dimethylase is required for organized root growth and epidermal patterning in Arabidopsis. Wieckowski Y, et al. Plant Cell, 2012 Jul. PMID 22829145, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_130310.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables rRNA (adenine-N6,N6-)-dimethyltransferase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell division IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within cell fate specification IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ribosomal RNA adenine dimethylase family protein
NP_182264.1
  • Ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity; INVOLVED IN: rRNA modification, rRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine dimethylase (InterPro:IPR011530), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 9871 Blast hits to 9860 proteins in 3038 species: Archae - 214; Bacteria - 6519; Metazoa - 271; Fungi - 146; Plants - 120; Viruses - 0; Other Eukaryotes - 2601 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    19457374..19458924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_130310.3 → NP_182264.1  Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_182264.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22268
    UniProtKB/TrEMBL
    A0A178VWJ8, A0A5S9X819
    Conserved Domains (1) summary
    PTZ00338
    Location:23 → 353
    PTZ00338; dimethyladenosine transferase-like protein; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O22268.1

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