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Small nuclear ribonucleoprotein family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819377, updated on 18-Sep-2024

Summary

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Official Full Name
Small nuclear ribonucleoprotein family protein
Primary source
TAIR:AT2G47640
Locus tag
AT2G47640
See related
Araport:AT2G47640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17A22.3
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (19537090..19538820)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene SWITCH/sucrose nonfermenting 3A Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene UDP-xylose synthase 4 Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene zinc finger (CCCH type) helicase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084607.1
NM_130332.4
NM_180146.5
NM_201981.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in nucleolus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Small nuclear ribonucleoprotein family protein
NP_001078076.1
  • Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G62840.1); Has 791 Blast hits to 791 proteins in 229 species: Archae - 2; Bacteria - 0; Metazoa - 328; Fungi - 181; Plants - 143; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
NP_566107.1
  • Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G62840.1); Has 791 Blast hits to 791 proteins in 229 species: Archae - 2; Bacteria - 0; Metazoa - 328; Fungi - 181; Plants - 143; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
NP_850477.1
  • Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G62840.2); Has 797 Blast hits to 797 proteins in 230 species: Archae - 2; Bacteria - 0; Metazoa - 331; Fungi - 182; Plants - 143; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).
NP_973710.1
  • Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G62840.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    19537090..19538820
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_201981.4 → NP_973710.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973710.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VYC0, A0A384LL34, O22247
    Conserved Domains (1) summary
    cd01720
    Location:18 → 107
    Sm_D2; Sm protein D2

  2. NM_130332.4 → NP_566107.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566107.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VZZ5, A0A384KAB2, Q8RUH0
    Conserved Domains (1) summary
    cd01720
    Location:19 → 108
    Sm_D2; Sm protein D2

  3. NM_180146.5 → NP_850477.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850477.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VYC0, A0A384LL34, O22247
    Conserved Domains (1) summary
    cd01720
    Location:18 → 107
    Sm_D2; Sm protein D2

  4. NM_001084607.1 → NP_001078076.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078076.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VZZ5, A0A384KAB2, Q8RUH0
    Conserved Domains (1) summary
    cd01720
    Location:19 → 108
    Sm_D2; Sm protein D2
Nucleotide Protein
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