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MEF19 mitochondrial editing factor 19 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819688, updated on 18-Sep-2024

Summary

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Official Symbol
MEF19
Official Full Name
mitochondrial editing factor 19
Primary source
TAIR:AT3G05240
Locus tag
AT3G05240
See related
Araport:AT3G05240
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
mitochondrial editing factor 19; mitochondrial editing factor 19; T12H1.21; T12H1_21
Summary
Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.
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Genomic context

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See MEF19 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (1493684..1495381, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene nucleotide repair protein Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene Signal peptidase subunit Neighboring gene RING/U-box superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene filament-like protein (DUF869)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana. Takenaka M, et al. J Biol Chem, 2010 Aug 27. PMID 20566637, Free PMC Article
  2. Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants. Takenaka M, et al. Proc Natl Acad Sci U S A, 2012 Mar 27. PMID 22411807, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mitochondrial mRNA modification IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
mitochondrial editing factor 19
NP_187175.2
  • mitochondrial editing factor 19 (MEF19); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1 (TAIR:AT2G22410.1); Has 38600 Blast hits to 13827 proteins in 232 species: Archae - 0; Bacteria - 10; Metazoa - 58; Fungi - 134; Plants - 37910; Viruses - 0; Other Eukaryotes - 488 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    1493684..1495381 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111397.2 → NP_187175.2  mitochondrial editing factor 19 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187175.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9MA95
    UniProtKB/TrEMBL
    A0A178VJD5
    Conserved Domains (2) summary
    PLN03077
    Location:60 → 562
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:385 → 412
    PPR; PPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9MA95.2

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