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spindle pole body component-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819752, updated on 18-Sep-2024

Summary

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Official Full Name
spindle pole body component-like protein
Primary source
TAIR:AT3G05830
Locus tag
AT3G05830
See related
Araport:AT3G05830
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Summary
Encodes alpha-helical IF (intermediate filament)-like protein.
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (1736307..1738749)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene IGR motif protein Neighboring gene invertase H Neighboring gene tRNA-Ile Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel family of plant nuclear envelope-associated proteins. Pawar V, et al. J Exp Bot, 2016 Oct. PMID 27630107
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_111457.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nuclear envelope IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
spindle pole body component-like protein
NP_001319484.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26770.1).
NP_566262.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26770.1); Has 58119 Blast hits to 29878 proteins in 2086 species: Archae - 743; Bacteria - 6396; Metazoa - 31988; Fungi - 4358; Plants - 2396; Viruses - 181; Other Eukaryotes - 12057 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    1736307..1738749
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001337615.1 → NP_001327832.1  spindle pole body component-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56Y98, Q9M9L3, Q9ZRC5
    UniProtKB/TrEMBL
    A0A5S9X9G3, A0A654FF17
    Conserved Domains (1) summary
    COG1196
    Location:13 → 299
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  2. NM_001337614.1 → NP_001319484.1  spindle pole body component-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9X9G3, F4J8J0

  3. NM_111457.2 → NP_566262.1  spindle pole body component-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566262.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56Y98, Q9M9L3, Q9ZRC5
    UniProtKB/TrEMBL
    A0A5S9X9G3, A0A654FF17
    Conserved Domains (1) summary
    COG1196
    Location:13 → 299
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M9L3.1

Gene LinkOut

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