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Heavy metal transport/detoxification superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819786, updated on 18-Sep-2024

Summary

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Official Full Name
Heavy metal transport/detoxification superfamily protein
Primary source
TAIR:AT3G06130
Locus tag
AT3G06130
See related
Araport:AT3G06130
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (1852808..1855197, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein Neighboring gene RING zinc finger protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001202893.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall HDA PubMed 

General protein information

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Preferred Names
Heavy metal transport/detoxification superfamily protein
NP_001189822.1
  • Heavy metal transport/detoxification superfamily protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G19090.3).
NP_566273.1
  • Heavy metal transport/detoxification superfamily protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G19090.1); Has 122077 Blast hits to 41053 proteins in 2213 species: Archae - 188; Bacteria - 33817; Metazoa - 49902; Fungi - 6812; Plants - 10774; Viruses - 1540; Other Eukaryotes - 19044 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    1852808..1855197 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111488.4 → NP_566273.1  Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566273.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M8K5
    UniProtKB/TrEMBL
    A0A178VG87, A0A5S9X9K2
    Conserved Domains (1) summary
    cd00371
    Location:13 → 72
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...

  2. NM_001202893.1 → NP_001189822.1  Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189822.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J9P5
    Conserved Domains (1) summary
    cd00371
    Location:13 → 72
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M8K5.1

Gene LinkOut

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