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SAC3B SAC3/GANP/Nin1/mts3/eIF-3 p25 family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819803, updated on 18-Sep-2024

Summary

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Official Symbol
SAC3B
Official Full Name
SAC3/GANP/Nin1/mts3/eIF-3 p25 family
Primary source
TAIR:AT3G06290
Locus tag
AT3G06290
See related
Araport:AT3G06290
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtSAC3B; F28L1.23; F28L1_23; yeast Sac3 homolog B
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Genomic context

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See SAC3B in Genome Data Viewer
Location:
chromosome: 3
Exon count:
19
Sequence:
Chromosome: 3; NC_003074.8 (1898877..1907448, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 2C family protein Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene P4H isoform 2 Neighboring gene miscRNA Neighboring gene Cox19-like CHCH family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SAC3B, a central component of the mRNA export complex TREX-2, is required for prevention of epigenetic gene silencing in Arabidopsis. Yang Y, et al. Nucleic Acids Res, 2017 Jan 9. PMID 27672037, Free PMC Article
  2. SAC3B is a target of CML19, the centrin 2 of Arabidopsis thaliana. Pedretti M, et al. Biochem J, 2020 Jan 17. PMID 31860002
  3. Arabidopsis homolog of the yeast TREX-2 mRNA export complex: components and anchoring nucleoporin. Lu Q, et al. Plant J, 2010 Jan. PMID 19843313
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001337645.1
NM_001337646.1
NM_111504.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nuclear periphery IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SAC3/GANP/Nin1/mts3/eIF-3 p25 family
NP_187280.3
  • SAC3/GANP/Nin1/mts3/eIF-3 p25 family; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: SAC3/GANP/Nin1/mts3/eIF-3 p25 family (TAIR:AT3G54380.1); Has 1557 Blast hits to 1047 proteins in 222 species: Archae - 0; Bacteria - 35; Metazoa - 487; Fungi - 321; Plants - 148; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    1898877..1907448 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001337644.1 → NP_001327777.1  SAC3/GANP/Nin1/mts3/eIF-3 p25 family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LTD0, A0A5S9X9M6
    Conserved Domains (4) summary
    PHA03247
    Location:12 → 359
    PHA03247; large tegument protein UL36; Provisional
    pfam09606
    Location:35 → 178
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam03399
    Location:465 → 763
    SAC3_GANP; SAC3/GANP family
    pfam16769
    Location:1101 → 1452
    MCM3AP_GANP; MCM3AP domain of GANP

  2. NM_111504.3 → NP_187280.3  SAC3/GANP/Nin1/mts3/eIF-3 p25 family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187280.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JAU2, Q9M8I9
    UniProtKB/TrEMBL
    A0A654F698
    Conserved Domains (3) summary
    COG5079
    Location:444 → 927
    SAC3; Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]
    pfam03399
    Location:536 → 763
    SAC3_GANP; SAC3/GANP/Nin1/mts3/eIF-3 p25 family
    pfam16769
    Location:1119 → 1458
    MCM3AP_GANP; MCM3AP domain of GANP

  3. NM_001337645.1 → NP_001327776.1  SAC3/GANP/Nin1/mts3/eIF-3 p25 family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V7S6, A0A178V9D9, A0A1I9LTC9, A0A384KH48

  4. NM_001337646.1 → NP_001327778.1  SAC3/GANP/Nin1/mts3/eIF-3 p25 family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V9D9, A0A1I9LTD1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4JAU2.1

Gene LinkOut

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