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PAPA-1-like family protein / zinc finger (HIT type) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819851, updated on 18-Sep-2024

Summary

Official Full Name
PAPA-1-like family protein / zinc finger (HIT type) family protein
Primary source
TAIR:AT3G06660
Locus tag
AT3G06660
See related
Araport:AT3G06660
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T8E24.3
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Genomic context

Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (2102316..2104908)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene aldehyde dehydrogenase 22A1 Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene tRNA-His Neighboring gene binding protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_111546.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of Ino80 complex IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
PAPA-1-like family protein / zinc finger (HIT type) family protein
NP_566289.1
  • PAPA-1-like family protein / zinc finger (HIT type) family protein; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529), PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: HIT zinc finger; PAPA-1-like conserved region (TAIR:AT2G47350.1); Has 668 Blast hits to 539 proteins in 161 species: Archae - 0; Bacteria - 83; Metazoa - 198; Fungi - 84; Plants - 88; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2102316..2104908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111546.4NP_566289.1  PAPA-1-like family protein / zinc finger (HIT type) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566289.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VD47, Q94CE6
    Conserved Domains (2) summary
    pfam04438
    Location:383414
    zf-HIT; HIT zinc finger
    pfam04795
    Location:282366
    PAPA-1; PAPA-1-like conserved region