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GPI transamidase component Gpi16 subunit family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819900, updated on 18-Sep-2024

Summary

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Official Full Name
GPI transamidase component Gpi16 subunit family protein
Primary source
TAIR:AT3G07140
Locus tag
AT3G07140
See related
Araport:AT3G07140
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (2261104..2264064)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein Neighboring gene purple acid phosphatase 15 Neighboring gene amino acid-ligase Neighboring gene glucan synthase-like 10 Neighboring gene Sterile alpha motif (SAM) domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
  2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_111594.4
NM_180199.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in attachment of GPI anchor to protein IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of GPI-anchor transamidase complex IEA
Inferred from Electronic Annotation
more info
  
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in endoplasmic reticulum HDA PubMed 

General protein information

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Preferred Names
GPI transamidase component Gpi16 subunit family protein
NP_566299.1
  • GPI transamidase component Gpi16 subunit family protein; FUNCTIONS IN: GPI-anchor transamidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gpi16 subunit, GPI transamidase component (InterPro:IPR007245); Has 383 Blast hits to 363 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 164; Fungi - 131; Plants - 68; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
NP_850530.1
  • GPI transamidase component Gpi16 subunit family protein; FUNCTIONS IN: GPI-anchor transamidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gpi16 subunit, GPI transamidase component (InterPro:IPR007245); Has 383 Blast hits to 363 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 164; Fungi - 131; Plants - 68; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2261104..2264064
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111594.4 → NP_566299.1  GPI transamidase component Gpi16 subunit family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566299.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VJE1, A0A384K908, Q949U5, Q9SFU4
    Conserved Domains (1) summary
    pfam04113
    Location:16 → 588
    Gpi16; Gpi16 subunit, GPI transamidase component

  2. NM_180199.2 → NP_850530.1  GPI transamidase component Gpi16 subunit family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850530.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VHF2, A0A384L9F2, F4JDA1, Q9SFU4
    Conserved Domains (1) summary
    pfam04113
    Location:16 → 589
    Gpi16; Gpi16 subunit, GPI transamidase component
Nucleotide Protein
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