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Ubiquitin-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819977, updated on 18-Sep-2024

Summary

Official Full Name
Ubiquitin-like superfamily protein
Primary source
TAIR:AT3G07860
Locus tag
AT3G07860
See related
Araport:AT3G07860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (2507880..2509589)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene ncRNA Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene ncRNA

Pathways from PubChem

General gene information

NM_111665.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
Ubiquitin-like superfamily protein
NP_187443.2
  • Ubiquitin-like superfamily protein; BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT5G25340.1); Has 145 Blast hits to 145 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 77; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2507880..2509589
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001337746.1NP_001325551.1  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LLK7
    Conserved Domains (1) summary
    pfam18036
    Location:52137
    Ubiquitin_4; Ubiquitin-like domain
  2. NM_001337747.1NP_001325550.1  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84WS8, Q9SFC8
    UniProtKB/TrEMBL
    A0A178V8D0, A0A5S9XAR0
    Conserved Domains (1) summary
    pfam18036
    Location:52140
    Ubiquitin_4; Ubiquitin-like domain
  3. NM_111665.3NP_187443.2  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187443.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84WS8, Q9SFC8
    UniProtKB/TrEMBL
    A0A178V8D0, A0A5S9XAR0
    Conserved Domains (1) summary
    pfam18036
    Location:52140
    Ubiquitin_4; Ubiquitin-like domain