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ZIP metal ion transporter family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820012, updated on 18-Sep-2024

Summary

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Official Full Name
ZIP metal ion transporter family
Primary source
TAIR:AT3G08650
Locus tag
AT3G08650
See related
Araport:AT3G08650
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (2624385..2627455, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene alphavirus core family protein (DUF3411) Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene serine/arginine repetitive matrix-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_111699.6
NM_202527.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables metal ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within metal ion transport ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within monoatomic cation transmembrane transport ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ZIP metal ion transporter family
NP_187477.1
  • ZIP metal ion transporter family; FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: transmembrane transport, metal ion transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP metal ion transporter family (TAIR:AT3G20870.1); Has 4142 Blast hits to 3425 proteins in 1059 species: Archae - 130; Bacteria - 2604; Metazoa - 766; Fungi - 8; Plants - 161; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).
NP_974256.1
  • ZIP metal ion transporter family; FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport, transmembrane transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP metal ion transporter family (TAIR:AT3G20870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2624385..2627455 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111699.6 → NP_187477.1  ZIP metal ion transporter family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187477.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VKM2, A0A5S9XA80
    Conserved Domains (2) summary
    COG0428
    Location:74 → 291
    ZupT; Zinc transporter ZupT [Inorganic ion transport and metabolism]
    cl00437
    Location:439 → 576
    Zip; ZIP Zinc transporter

  2. NM_202527.1 → NP_974256.1  ZIP metal ion transporter family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974256.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L600, Q9C9Z1
    UniProtKB/TrEMBL
    A0A5S9XA80
    Conserved Domains (2) summary
    COG0428
    Location:98 → 315
    ZupT; Zinc transporter ZupT [Inorganic ion transport and metabolism]
    cl00437
    Location:463 → 600
    Zip; ZIP Zinc transporter
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C9Z1.2

Gene LinkOut

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