U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820048, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
ARM repeat superfamily protein
Primary source
TAIR:AT3G08960
Locus tag
AT3G08960
See related
Araport:AT3G08960
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
25
Sequence:
Chromosome: 3; NC_003074.8 (2729743..2737356, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ARM repeat superfamily protein Neighboring gene electron transport SCO1/SenC family protein Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene Peptidase S24/S26A/S26B/S26C family protein Neighboring gene Yippee family putative zinc-binding protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A karyopherin constrains nuclear activity of the NLR protein SNC1 and is essential to prevent autoimmunity in Arabidopsis. Jia M, et al. Mol Plant, 2021 Oct 4. PMID 34153500
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_001337786.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables nuclear export signal receptor activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in immune response IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in nucleocytoplasmic transport IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within protein transport ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
part_of nucleocytoplasmic transport complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
ARM repeat superfamily protein
NP_001319503.1
  • ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G26170.1); Has 1304 Blast hits to 1268 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 515; Fungi - 472; Plants - 189; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2729743..2737356 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001337787.1 → NP_001326132.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VK82, A0A5S9XAA3, F4IYK6

  2. NM_111730.6 → NP_187508.5  ARM repeat superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187508.5

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VK82, A0A5S9XAA3, F4IYK6
    Conserved Domains (2) summary
    COG5657
    Location:6 → 969
    CSE1; CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
    pfam03810
    Location:29 → 102
    IBN_N; Importin-beta N-terminal domain

  3. NM_001337786.1 → NP_001319503.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VK82, A0A5S9XAA3, F4IYK6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools