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Histone superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820105, updated on 18-Sep-2024

Summary

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Official Full Name
Histone superfamily protein
Primary source
TAIR:AT3G09480
Locus tag
AT3G09480
See related
Araport:AT3G09480
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (2914701..2915442, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit Neighboring gene Major facilitator superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Ribosomal L29 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_111782.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Histone superfamily protein
NP_187559.1
  • Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G02570.1); Has 3226 Blast hits to 3226 proteins in 338 species: Archae - 0; Bacteria - 0; Metazoa - 2242; Fungi - 198; Plants - 460; Viruses - 0; Other Eukaryotes - 326 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2914701..2915442 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111782.3 → NP_187559.1  Histone superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187559.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SF55
    UniProtKB/TrEMBL
    A0A178V4X7, A0A5S9XAF5
    Conserved Domains (1) summary
    cl23830
    Location:1 → 126
    H2B; Histone H2B
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SF55.3

Gene LinkOut

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