Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Tudor/PWWP/MBT superfamily protein
Primary source: TAIR:AT3G09670
Locus tag: AT3G09670
See related: Araport:AT3G09670
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 2

Sequence:: Chromosome: 3; NC_003074.8 (2966201..2969058)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001084659.1

Supported by ESTs:

NM_111801.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within epigenetic regulation of gene expression	IGI Inferred from Genetic Interaction more info	PubMed
involved_in epigenetic regulation of gene expression	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of DNA-templated transcription	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of photoperiodism, flowering	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
part_of ESC/E(Z) complex	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Tudor/PWWP/MBT superfamily protein

NP_001078128.1

Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT5G02950.1); Has 880 Blast hits to 796 proteins in 129 species: Archae - 0; Bacteria - 16; Metazoa - 486; Fungi - 43; Plants - 152; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).

NP_187578.1

Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT5G02950.1); Has 880 Blast hits to 796 proteins in 129 species: Archae - 0; Bacteria - 16; Metazoa - 486; Fungi - 43; Plants - 152; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

2966201..2969058

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_111801.5 → NP_187578.1 Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_187578.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q0WMU6, Q9SF36

UniProtKB/TrEMBL

A0A178VA92, A0A5S9XAS9

Conserved Domains (1) summary

cd05162
Location:197 → 283

PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...
NM_001084659.1 → NP_001078128.1 Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001078128.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q0WMU6, Q9SF36

UniProtKB/TrEMBL

A0A178VA92, A0A5S9XAS9

Conserved Domains (1) summary

cd05162
Location:197 → 283

PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...