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PAS_chr4_0524 40S ribosomal protein S1 [ Komagataella phaffii GS115 ]

Gene ID: 8201466, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr4_0524
Gene description
40S ribosomal protein S1
Locus tag
PAS_chr4_0524
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr4_0524 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_012966.1 (1025620..1026390, complement)

Chromosome 4 - NC_012966.1Genomic Context describing neighboring genes Neighboring gene Ubiquitin-protein ligase (E3) that interacts with Rad6p/Ubc2p Neighboring gene Cytoplasmic tyrosyl-tRNA synthetase, class I aminoacyl-tRNA synthetase Neighboring gene GTP-binding protein of the ras superfamily involved in termination of M-phase Neighboring gene Largest subunit of the origin recognition complex

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012966.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
40S ribosomal protein S1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012966.1 Reference assembly

    Range
    1025620..1026390 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002493912.1 → XP_002493957.1  40S ribosomal protein S1 [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002493957.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    C4R853
    UniProtKB/TrEMBL
    F2QYZ2
    Conserved Domains (1) summary
    pfam01015
    Location:20 → 219
    Ribosomal_S3Ae; Ribosomal S3Ae family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
C4R853.1

Gene LinkOut

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Molecular Biology Databases
Research Materials