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Calcineurin-like metallo-phosphoesterase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820158, updated on 18-Sep-2024

Summary

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Official Full Name
Calcineurin-like metallo-phosphoesterase superfamily protein
Primary source
TAIR:AT3G09970
Locus tag
AT3G09970
See related
Araport:AT3G09970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (3063736..3065577)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Calcineurin-like metallo-phosphoesterase superfamily protein Neighboring gene ankyrin repeat 30A-like protein (DUF662) Neighboring gene Nucleoside transporter family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structural basis for the preference of the Arabidopsis thaliana phosphatase RLPH2 for tyrosine-phosphorylated substrates. Labandera AM, et al. Sci Signal, 2018 Apr 3. PMID 29615518
  2. Rhizobiales-like Phosphatase 2 from Arabidopsis thaliana Is a Novel Phospho-tyrosine-specific Phospho-protein Phosphatase (PPP) Family Protein Phosphatase. Uhrig RG, et al. J Biol Chem, 2016 Mar 11. PMID 26742850, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Arabidopsis thaliana Rhizobiales-like phosphatase 2 (RLPH2) strongly prefers substrates bearing phosphorylated tyrosine residues.
    Title: Structural basis for the preference of the Arabidopsis thaliana phosphatase RLPH2 for tyrosine-phosphorylated substrates.
  2. Rhizobiales-like protein phosphatase 2 is localized to the plant cell cytosol and is particularly sensitive to inhibition by the adenylates, ATP and ADP.
    Title: Rhizobiales-like Phosphatase 2 from Arabidopsis thaliana Is a Novel Phospho-tyrosine-specific Phospho-protein Phosphatase (PPP) Family Protein Phosphatase.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_001337852.1
NM_111832.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
NOT enables protein serine/threonine phosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein tyrosine phosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
NOT involved_in peptidyl-serine dephosphorylation IDA
Inferred from Direct Assay
more info
 PubMed 
NOT involved_in peptidyl-threonine dephosphorylation IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within peptidyl-tyrosine dephosphorylation IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Calcineurin-like metallo-phosphoesterase superfamily protein
NP_566364.1
  • Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT3G09960.1); Has 1009 Blast hits to 1009 proteins in 371 species: Archae - 12; Bacteria - 594; Metazoa - 24; Fungi - 11; Plants - 146; Viruses - 12; Other Eukaryotes - 210 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3063736..3065577
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111832.3 → NP_566364.1  Calcineurin-like metallo-phosphoesterase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566364.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178V7L4, Q8L8R0, Q8RXI9, Q9SR62
    UniProtKB/TrEMBL
    A0A384KNX5, A0A5S9XAR1
    Conserved Domains (1) summary
    cd07421
    Location:5 → 308
    MPP_Rhilphs; Rhilph phosphatases, metallophosphatase domain

  2. NM_001337852.1 → NP_001326144.1  Calcineurin-like metallo-phosphoesterase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LND6
    Conserved Domains (1) summary
    cl13995
    Location:5 → 253
    MPP_superfamily; metallophosphatase superfamily, metallophosphatase domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SR62.1

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