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TBL32 TRICHOME BIREFRINGENCE-LIKE 32 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820274, updated on 18-Sep-2024

Summary

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Official Symbol
TBL32
Official Full Name
TRICHOME BIREFRINGENCE-LIKE 32
Primary source
TAIR:AT3G11030
Locus tag
AT3G11030
See related
Araport:AT3G11030
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
TRICHOME BIREFRINGENCE-LIKE 32
Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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Genomic context

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See TBL32 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (3456257..3459380, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene DCD (Development and Cell Death) domain protein Neighboring gene receptor like protein 34 Neighboring gene DRE/CRT-binding protein 2B Neighboring gene Glycosyl hydrolase family 85 Neighboring gene ferritin 2 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mutations of Arabidopsis TBL32 and TBL33 Affect Xylan Acetylation and Secondary Wall Deposition. Yuan Y, et al. PLoS One, 2016. PMID 26745802, Free PMC Article
  2. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
  3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
  4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. TBL32 and TBL33 play an important role in xylan acetylation and normal deposition of secondary walls in Arabidopsis.
    Title: Mutations of Arabidopsis TBL32 and TBL33 Affect Xylan Acetylation and Secondary Wall Deposition.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_111940.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables xylan O-acetyltransferase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within plant-type secondary cell wall biogenesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within xylan acetylation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in Golgi trans cisterna HDA PubMed 

General protein information

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Preferred Names
TRICHOME BIREFRINGENCE-LIKE 32
NP_187714.1
  • TRICHOME BIREFRINGENCE-LIKE 32 (TBL32); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 33 (TAIR:AT2G40320.1); Has 40045 Blast hits to 14436 proteins in 846 species: Archae - 57; Bacteria - 5065; Metazoa - 12608; Fungi - 2698; Plants - 11562; Viruses - 2042; Other Eukaryotes - 6013 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3456257..3459380 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111940.3 → NP_187714.1  TRICHOME BIREFRINGENCE-LIKE 32 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187714.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SRL3
    UniProtKB/TrEMBL
    A0A178VBD7, A0A5S9XBK8
    Conserved Domains (2) summary
    pfam13839
    Location:159 → 446
    PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
    pfam14416
    Location:104 → 158
    PMR5N; PMR5 N terminal Domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SRL3.1

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