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ENGase85B Glycosyl hydrolase family 85 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820275, updated on 18-Sep-2024

Summary

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Official Symbol
ENGase85B
Official Full Name
Glycosyl hydrolase family 85
Primary source
TAIR:AT3G11040
Locus tag
AT3G11040
See related
Araport:AT3G11040
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtENGase85B; Endo-beta-N-acetyglucosaminidase 85B
Summary
Encodes a cytosolic beta-endo-N-acetyglucosaminidase (ENGase). ENGases N-glycans cleave the O-glycosidic linkage between the two GlcNAc residues of the N-glycan core structure and thus generate a protein with a single GlcNAc attached to asparagine.
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Genomic context

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See ENGase85B in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Sequence:
Chromosome: 3; NC_003074.8 (3459939..3463484)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DCD (Development and Cell Death) domain protein Neighboring gene receptor like protein 34 Neighboring gene DRE/CRT-binding protein 2B Neighboring gene TRICHOME BIREFRINGENCE-LIKE 32 Neighboring gene ferritin 2 Neighboring gene uncharacterized protein Neighboring gene Outer membrane OMP85 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The two endo-β-N-acetylglucosaminidase genes from Arabidopsis thaliana encode cytoplasmic enzymes controlling free N-glycan levels. Fischl RM, et al. Plant Mol Biol, 2011 Oct. PMID 21796445
  2. Double-knockout of putative endo-β-N-acetylglucosaminidase (ENGase) genes in Arabidopsis thaliana: loss of ENGase activity induced accumulation of high-mannose type free N-glycans bearing N,N'-acetylchitobiosyl unit. Kimura Y, et al. Biosci Biotechnol Biochem, 2011. PMID 21597164
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data indicated that At5g05460 and At3g11040 were referred to as AtENGase85A and AtENGase85B respectively, reflecting their classification as Cazy family number 85 enzymes.
    Title: The two endo-β-N-acetylglucosaminidase genes from Arabidopsis thaliana encode cytoplasmic enzymes controlling free N-glycan levels.
Submit: New GeneRIF Correction

General gene information

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Markers

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity IEA
Inferred from Electronic Annotation
more info
  
enables mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within N-glycan processing IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within protein deglycosylation IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Glycosyl hydrolase family 85
NP_001319520.1
  • Glycosyl hydrolase family 85; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 85 (InterPro:IPR005201), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 85 (TAIR:AT5G05460.1); Has 486 Blast hits to 477 proteins in 213 species: Archae - 0; Bacteria - 256; Metazoa - 108; Fungi - 38; Plants - 49; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3459939..3463484
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001337912.1 → NP_001327589.1  Glycosyl hydrolase family 85 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LSS7, A0A654F600

  2. NM_111941.2 → NP_187715.2  Glycosyl hydrolase family 85 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LSS8, A0A654F600

  3. NM_001337911.1 → NP_001319520.1  Glycosyl hydrolase family 85 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SRL4
    UniProtKB/TrEMBL
    A0A2H1ZEI4
Nucleotide Protein
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