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sequence-specific DNA binding transcription factor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820281, updated on 18-Sep-2024

Summary

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Official Full Name
sequence-specific DNA binding transcription factor
Primary source
TAIR:AT3G11100
Locus tag
AT3G11100
See related
Araport:AT3G11100
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (3476187..3477900, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene receptor like protein 35 Neighboring gene LOB domain-containing protein 21 Neighboring gene RING/U-box superfamily protein Neighboring gene Ribosomal protein L41 family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ENAP1 retrains seed germination via H3K9 acetylation mediated positive feedback regulation of ABI5. Zhao B, et al. PLoS Genet, 2021 Dec. PMID 34910726, Free PMC Article
  2. Interaction of Arabidopsis Trihelix-Domain Transcription Factors VFP3 and VFP5 with Agrobacterium Virulence Protein VirF. García-Cano E, et al. PLoS One, 2015. PMID 26571494, Free PMC Article
  3. Histone Deacetylases SRT1 and SRT2 Interact with ENAP1 to Mediate Ethylene-Induced Transcriptional Repression. Zhang F, et al. Plant Cell, 2018 Jan. PMID 29298835, Free PMC Article
  4. EIN2 mediates direct regulation of histone acetylation in the ethylene response. Zhang F, et al. Proc Natl Acad Sci U S A, 2017 Sep 19. PMID 28874528, Free PMC Article
  5. EIN2-dependent regulation of acetylation of histone H3K14 and non-canonical histone H3K23 in ethylene signalling. Zhang F, et al. Nat Commun, 2016 Oct 3. PMID 27694846, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. ENAP1 retrains seed germination via H3K9 acetylation mediated positive feedback regulation of ABI5.
    Title: ENAP1 retrains seed germination via H3K9 acetylation mediated positive feedback regulation of ABI5.
  2. This work establishes a mechanism by which histone deacetylases SRT1 and SRT2 interact with ENAP1 to mediate transcriptional repression by regulating the levels of histone H3 lysine 9 acetylation in the ethylene signaling.[ENAP1]
    Title: Histone Deacetylases SRT1 and SRT2 Interact with ENAP1 to Mediate Ethylene-Induced Transcriptional Repression.
  3. ENAP1 may potentially mediate ethylene-induced histone acetylation via its interactions with EIN2 C terminus. [ENAP1]
    Title: EIN2-dependent regulation of acetylation of histone H3K14 and non-canonical histone H3K23 in ethylene signalling.
  4. VFP3 likely plays an important role in controlling plant homeostasis.
    Title: Interaction of Arabidopsis Trihelix-Domain Transcription Factors VFP3 and VFP5 with Agrobacterium Virulence Protein VirF.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_111947.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables chromatin binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables histone binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables histone binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in epigenetic regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within ethylene-activated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus HDA PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
sequence-specific DNA binding transcription factor
NP_566386.1
  • sequence-specific DNA binding transcription factors; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: MADF domain (InterPro:IPR006578); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT5G05550.1); Has 692 Blast hits to 654 proteins in 102 species: Archae - 2; Bacteria - 29; Metazoa - 76; Fungi - 72; Plants - 388; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3476187..3477900 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111947.4 → NP_566386.1  sequence-specific DNA binding transcription factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566386.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LF33, Q8VZI9, Q9C781, Q9SRL9
    UniProtKB/TrEMBL
    A0A178VEE5, A0A654F752
    Conserved Domains (1) summary
    pfam13837
    Location:19 → 100
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VZI9.1

Gene LinkOut

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