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Sterile alpha motif (SAM) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820362, updated on 18-Sep-2024

Summary

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Official Full Name
Sterile alpha motif (SAM) domain-containing protein
Primary source
TAIR:AT3G11890
Locus tag
AT3G11890
See related
Araport:AT3G11890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (3755456..3757842)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Endoribonuclease/protein kinase IRE1-like protein Neighboring gene transmembrane protein, putative (Protein of unknown function DUF2359, transmembrane) Neighboring gene aromatic and neutral transporter 1 Neighboring gene ubiquitin-specific protease 13 Neighboring gene glutaredoxin-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001337955.1
NM_001337956.1
NM_001337957.1
NM_001337958.1
NM_001337959.1
NM_112022.2
NM_202561.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Sterile alpha motif (SAM) domain-containing protein
NP_566404.1
  • Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 2 (InterPro:IPR011510); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11860.1); Has 845 Blast hits to 523 proteins in 122 species: Archae - 0; Bacteria - 34; Metazoa - 393; Fungi - 118; Plants - 48; Viruses - 10; Other Eukaryotes - 242 (source: NCBI BLink).
NP_974290.1
  • Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 2 (InterPro:IPR011510); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3755456..3757842
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202561.3 → NP_974290.1  Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974290.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XBU8, Q9SF10
    Conserved Domains (1) summary
    pfam07647
    Location:460 → 516
    SAM_2; SAM domain (Sterile alpha motif)

  2. NM_112022.2 → NP_566404.1  Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566404.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EKX6, Q9FDY0
    Conserved Domains (1) summary
    pfam07647
    Location:433 → 489
    SAM_2; SAM domain (Sterile alpha motif)

  3. NM_001337955.1 → NP_001326446.1  Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XBU8, Q9SF10
    Conserved Domains (1) summary
    pfam07647
    Location:460 → 516
    SAM_2; SAM domain (Sterile alpha motif)

  4. NM_001337956.1 → NP_001326445.1  Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EKX6, Q9FDY0
    Conserved Domains (1) summary
    pfam07647
    Location:433 → 489
    SAM_2; SAM domain (Sterile alpha motif)

  5. NM_001337957.1 → NP_001326444.1  Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XBU8, Q9SF10
    Conserved Domains (1) summary
    pfam07647
    Location:460 → 516
    SAM_2; SAM domain (Sterile alpha motif)

  6. NM_001337958.1 → NP_001326443.1  Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EKX6, Q9FDY0
    Conserved Domains (1) summary
    pfam07647
    Location:433 → 489
    SAM_2; SAM domain (Sterile alpha motif)

  7. NM_001337959.1 → NP_001326442.1  Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EKX6, Q9FDY0
    Conserved Domains (1) summary
    pfam07647
    Location:433 → 489
    SAM_2; SAM domain (Sterile alpha motif)
Nucleotide Protein
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