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NOP56-like pre RNA processing ribonucleoprotein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820468, updated on 18-Sep-2024

Summary

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Official Full Name
NOP56-like pre RNA processing ribonucleoprotein
Primary source
TAIR:AT3G12860
Locus tag
AT3G12860
See related
Araport:AT3G12860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
8
Sequence:
Chromosome: 3; NC_003074.8 (4091567..4094195)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene COP9 signalosome complex-related / CSN complex-like protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene activator of spomin::LUC2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_112122.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
part_of box C/D methylation guide snoRNP complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
NOP56-like pre RNA processing ribonucleoprotein
NP_187892.2
  • NOP56-like pre RNA processing ribonucleoprotein; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain (InterPro:IPR002687), NOP5, N-terminal (InterPro:IPR012974), NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: homolog of nucleolar protein NOP56 (TAIR:AT1G56110.1); Has 9295 Blast hits to 5418 proteins in 524 species: Archae - 248; Bacteria - 207; Metazoa - 3152; Fungi - 1154; Plants - 664; Viruses - 16; Other Eukaryotes - 3854 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4091567..4094195
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112122.4 → NP_187892.2  NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187892.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VKP5, A0A384L547, Q0WVV7, Q9LTV0
    Conserved Domains (2) summary
    COG1498
    Location:46 → 443
    SIK1; RNA processing factor Prp31, contains Nop domain [Translation, ribosomal structure and biogenesis]
    pfam08156
    Location:4 → 69
    NOP5NT; NOP5NT (NUC127) domain
Nucleotide Protein
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