U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

carboxyl-terminal peptidase, putative (DUF239) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820553, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
carboxyl-terminal peptidase, putative (DUF239)
Primary source
TAIR:AT3G13510
Locus tag
AT3G13510
See related
Araport:AT3G13510
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (4403355..4406091)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Lysyl-tRNA synthetase, class II Neighboring gene uncharacterized protein Neighboring gene arabinogalactan protein 12 Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_112197.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
carboxyl-terminal peptidase, putative (DUF239)
NP_566457.1
  • Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G55360.1); Has 759 Blast hits to 705 proteins in 28 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 10; Plants - 734; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4403355..4406091
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112197.4 → NP_566457.1  carboxyl-terminal peptidase, putative (DUF239) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566457.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V7Z5, A0A384KEK7, Q8LAN5, Q9LJE0
    Conserved Domains (2) summary
    pfam03080
    Location:190 → 412
    Neprosin
    pfam14365
    Location:55 → 177
    Neprosin_AP; Neprosin activation peptide
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools