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O-Glycosyl hydrolases family 17 protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820558, updated on 18-Sep-2024

Summary

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Official Full Name
O-Glycosyl hydrolases family 17 protein
Primary source
TAIR:AT3G13560
Locus tag
AT3G13560
See related
Araport:AT3G13560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (4425191..4428199, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase 7 Neighboring gene ncRNA Neighboring gene Ubiquitin-conjugating enzyme family protein Neighboring gene SC35-like splicing factor 30A Neighboring gene Ribosomal protein L30/L7 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
  2. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
  3. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
  4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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NM_001338055.1
NM_001338056.1
NM_112202.5
NM_202573.3
NM_202574.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glucan endo-1,3-beta-D-glucosidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in membrane TAS
Traceable Author Statement
more info
 PubMed 
located_in plasma membrane HDA PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
O-Glycosyl hydrolases family 17 protein
NP_187965.1
  • O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G01630.1); Has 2864 Blast hits to 2791 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 51; Plants - 2798; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
NP_974302.1
  • O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G01630.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_974303.1
  • O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G01630.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4425191..4428199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112202.5 → NP_187965.1  O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187965.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DGU2, Q94CD8, Q9LJD6
    UniProtKB/TrEMBL
    A0A5S9XBT5, A0A654F6U5
    Conserved Domains (2) summary
    smart00768
    Location:362 → 446
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:26 → 343
    Glyco_hydro; Glycosyl hydrolases

  2. NM_202574.3 → NP_974303.1  O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974303.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DGU2, Q94CD8, Q9LJD6
    UniProtKB/TrEMBL
    A0A5S9XBT5, A0A654F6U5
    Conserved Domains (2) summary
    smart00768
    Location:362 → 446
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:26 → 343
    Glyco_hydro; Glycosyl hydrolases

  3. NM_202573.3 → NP_974302.1  O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974302.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DGU2, Q94CD8, Q9LJD6
    UniProtKB/TrEMBL
    A0A5S9XBT5, A0A654F6U5
    Conserved Domains (2) summary
    smart00768
    Location:362 → 446
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:26 → 343
    Glyco_hydro; Glycosyl hydrolases

  4. NM_001338056.1 → NP_001326916.1  O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DGU2, Q94CD8, Q9LJD6
    UniProtKB/TrEMBL
    A0A5S9XBT5, A0A654F6U5
    Conserved Domains (2) summary
    smart00768
    Location:362 → 446
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:26 → 343
    Glyco_hydro; Glycosyl hydrolases

  5. NM_001338055.1 → NP_001326917.1  O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DGU2, Q94CD8, Q9LJD6
    UniProtKB/TrEMBL
    A0A5S9XBT5, A0A654F6U5
    Conserved Domains (2) summary
    smart00768
    Location:362 → 446
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:26 → 343
    Glyco_hydro; Glycosyl hydrolases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94CD8.1

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