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APG12B Ubiquitin-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820611, updated on 18-Sep-2024

Summary

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Official Symbol
APG12B
Official Full Name
Ubiquitin-like superfamily protein
Primary source
TAIR:AT3G13970
Locus tag
AT3G13970
See related
Araport:AT3G13970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
APG12; ATG12B; AUTOPHAGY 12; AUTOPHAGY 12 B; AUTOPHAGY 12B
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Genomic context

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See APG12B in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (4613492..4614857, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene growth-regulating factor 5 Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ATG8 lipidation and ATG8-mediated autophagy in Arabidopsis require ATG12 expressed from the differentially controlled ATG12A AND ATG12B loci. Chung T, et al. Plant J, 2010 May. PMID 20136727
  2. Structure of the Atg12-Atg5 conjugate reveals a platform for stimulating Atg8-PE conjugation. Noda NN, et al. EMBO Rep, 2013 Feb. PMID 23238393, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001338094.1
NM_001338095.1
NM_001338096.1
NM_112251.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within autophagy IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Ubiquitin-like superfamily protein
NP_188013.2
  • AUTOPHAGY 12 B (APG12B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy; LOCATED IN: cytoplasm; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 12 (InterPro:IPR007242); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT1G54210.1); Has 304 Blast hits to 304 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 124; Plants - 58; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4613492..4614857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112251.4 → NP_188013.2  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188013.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LVK3
    UniProtKB/TrEMBL
    A0A178VDM5, A0A5S9XC98
    Conserved Domains (1) summary
    cd01612
    Location:11 → 93
    Ubl_ATG12; ubiquitin-like (Ubl) domain found in autophagy-related protein 12 (ATG12)

  2. NM_001338094.1 → NP_001326256.1  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LNQ3
    Conserved Domains (1) summary
    cl28922
    Location:11 → 61
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  3. NM_001338095.1 → NP_001326257.1  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LNQ3
    Conserved Domains (1) summary
    cl28922
    Location:11 → 61
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  4. NM_001338096.1 → NP_001326255.1  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LNQ2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LVK3.1

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