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MSL5 mechanosensitive channel of small conductance-like 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820710, updated on 18-Sep-2024

Summary

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Official Symbol
MSL5
Official Full Name
mechanosensitive channel of small conductance-like 5
Primary source
TAIR:AT3G14810
Locus tag
AT3G14810
See related
Araport:AT3G14810
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
mechanosensitive channel of small conductance-like 5
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Genomic context

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See MSL5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (4970944..4974534, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene rhamnose biosynthesis 3 Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001202966.1
NM_112342.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
mechanosensitive channel of small conductance-like 5
NP_001189895.1
  • mechanosensitive channel of small conductance-like 5 (MSL5); INVOLVED IN: transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 4 (TAIR:AT1G53470.1).
NP_188099.2
  • mechanosensitive channel of small conductance-like 5 (MSL5); INVOLVED IN: transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 4 (TAIR:AT1G53470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4970944..4974534 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112342.4 → NP_188099.2  mechanosensitive channel of small conductance-like 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188099.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56YB1, Q9LH74
    UniProtKB/TrEMBL
    A0A178VCQ0, A0A5S9XCQ5, A0A7G2EMN3
    Conserved Domains (1) summary
    cl39057
    Location:678 → 846
    MS_channel; Mechanosensitive ion channel

  2. NM_001202966.1 → NP_001189895.1  mechanosensitive channel of small conductance-like 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189895.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EMN3, F4IWA1
    Conserved Domains (2) summary
    COG0668
    Location:643 → 811
    MscS; Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis]
    pfam00924
    Location:643 → 811
    MS_channel; Mechanosensitive ion channel
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LH74.1

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