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ATA20 anther 20 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820779, updated on 18-Sep-2024

Summary

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Official Symbol
ATA20
Official Full Name
anther 20
Primary source
TAIR:AT3G15400
Locus tag
AT3G15400
See related
Araport:AT3G15400
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
anther 20
Summary
Encodes a protein with novel repeat sequences and a glycine-rich domain which has a 53% identity to GRP1, a petunia glycine-rich cell wall protein.
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Genomic context

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See ATA20 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (5201622..5203197)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Plasma-membrane choline transporter family protein Neighboring gene silencing defective 5 Neighboring gene HrpN-interacting protein from malus protein Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene Transcription factor TFIIIC, tau55-related protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification, sequence analysis and expression studies of novel anther-specific genes of Arabidopsis thaliana. Rubinelli P, et al. Plant Mol Biol, 1998 Jul. PMID 9687065
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001338169.1
NM_112408.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
anther 20
NP_001319559.1
  • anther 20 (ATA20); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; Has 84917 Blast hits to 22330 proteins in 1596 species: Archae - 105; Bacteria - 34710; Metazoa - 21170; Fungi - 4235; Plants - 7034; Viruses - 983; Other Eukaryotes - 16680 (source: NCBI BLink).
NP_188159.1
  • anther 20 (ATA20); Has 85610 Blast hits to 22901 proteins in 1663 species: Archae - 108; Bacteria - 34930; Metazoa - 21370; Fungi - 4329; Plants - 7115; Viruses - 983; Other Eukaryotes - 16775 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5201622..5203197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112408.3 → NP_188159.1  anther 20 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188159.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F7F6, Q9LD84
    Conserved Domains (1) summary
    cl14695
    Location:334 → 360
    PHA03410; hypothetical protein; Provisional

  2. NM_001338169.1 → NP_001319559.1  anther 20 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F7F6, F4IYR6
Nucleotide Protein
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