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Phototropic-responsive NPH3 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820797, updated on 18-Sep-2024

Summary

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Official Full Name
Phototropic-responsive NPH3 family protein
Primary source
TAIR:AT3G15570
Locus tag
AT3G15570
See related
Araport:AT3G15570
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (5269849..5271984, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene indole-3-acetic acid inducible 19 Neighboring gene uncharacterized protein Neighboring gene trichohyalin Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Ubiquitin-like superfamily protein Neighboring gene tRNA-Phe

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_112425.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Phototropic-responsive NPH3 family protein
NP_188176.1
  • Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G52770.1); Has 825 Blast hits to 823 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 824; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5269849..5271984 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112425.4 → NP_188176.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188176.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XDW6, A0A654F8U1, A0A7G2EL69, Q9LRP8
    Conserved Domains (1) summary
    pfam03000
    Location:30 → 283
    NPH3; NPH3 family
Nucleotide Protein
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