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plant self-incompatibility protein S1 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820829, updated on 18-Sep-2024

Summary

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Official Full Name
plant self-incompatibility protein S1 family protein
Primary source
TAIR:AT3G15860
Locus tag
AT3G15860
See related
Araport:AT3G15860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (5361207..5361719, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene post-illumination chlorophyll fluorescence increase Neighboring gene fatty acid desaturase 5 Neighboring gene Fatty acid desaturase family protein Neighboring gene WUS-interacting protein 2 Neighboring gene Protein kinase superfamily protein Neighboring gene homoserine O-acetyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_112456.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
plant self-incompatibility protein S1 family protein
NP_188207.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT5G26090.1); Has 19 Blast hits to 16 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5361207..5361719 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112456.1 → NP_188207.1  plant self-incompatibility protein S1 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188207.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VKW3, A0A384KAQ6, A0A5S9XCP7, Q5XVB9
Nucleotide Protein
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