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Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820836, updated on 18-Sep-2024

Summary

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Official Full Name
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
TAIR:AT3G15930
Locus tag
AT3G15930
See related
Araport:AT3G15930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (5387444..5389690)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Phox (PX) domain-containing protein Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_112463.1

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_188214.1
  • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 42861 Blast hits to 14596 proteins in 286 species: Archae - 0; Bacteria - 14; Metazoa - 129; Fungi - 192; Plants - 41743; Viruses - 0; Other Eukaryotes - 783 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5387444..5389690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112463.1 → NP_188214.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188214.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LSB8
    UniProtKB/TrEMBL
    A0A654F8X9
    Conserved Domains (6) summary
    TIGR00756
    Location:334 → 368
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:436 → 463
    PPR; PPR repeat [structural motif]
    pfam01535
    Location:202 → 230
    PPR; PPR repeat
    pfam12854
    Location:501 → 532
    PPR_1; PPR repeat
    pfam13041
    Location:332 → 380
    PPR_2; PPR repeat family
    pfam14432
    Location:606 → 654
    DYW_deaminase; DYW family of nucleic acid deaminases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LSB8.2

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