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PPR40 pentatricopeptide (PPR) domain protein 40 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820944, updated on 18-Sep-2024

Summary

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Official Symbol
PPR40
Official Full Name
pentatricopeptide (PPR) domain protein 40
Primary source
TAIR:AT3G16890
Locus tag
AT3G16890
See related
Araport:AT3G16890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
pentatricopeptide (PPR) domain protein 40
Summary
Encodes a mitochondrial pentatricopeptide repeat (PPR) domain protein, PPR40, which provides a signalling link between mitochondrial electron transport and regulation of stress and hormonal responses. Mutations in PPR40 result in enhanced sensitivity to salt, ABA and oxidative stress, as well as reduced electron transport through Complex III (cytochrome c reductase).
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Genomic context

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See PPR40 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (5767977..5770488, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 17 Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene Cysteine-rich protein Neighboring gene LURP-one-like protein (DUF567) Neighboring gene acyl-activating enzyme 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis PPR40 connects abiotic stress responses to mitochondrial electron transport. Zsigmond L, et al. Plant Physiol, 2008 Apr. PMID 18305213, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001338266.1
NM_112565.2

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within mitochondrial ATP synthesis coupled electron transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to abscisic acid IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to oxidative stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to salt stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
pentatricopeptide (PPR) domain protein 40
NP_188314.1
  • pentatricopeptide (PPR) domain protein 40 (PPR40); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1); Has 55842 Blast hits to 14078 proteins in 304 species: Archae - 4; Bacteria - 51; Metazoa - 561; Fungi - 1019; Plants - 52283; Viruses - 0; Other Eukaryotes - 1924 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5767977..5770488 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112565.2 → NP_188314.1  pentatricopeptide (PPR) domain protein 40 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188314.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LSQ2
    UniProtKB/TrEMBL
    A0A178VFN1, A0A5S9XD13
    Conserved Domains (4) summary
    PLN03218
    Location:178 → 584
    PLN03218; maturation of RBCL 1; Provisional
    TIGR00756
    Location:601 → 635
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:497 → 524
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:563 → 610
    PPR_2; PPR repeat family

  2. NM_001338266.1 → NP_001326054.1  pentatricopeptide (PPR) domain protein 40 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LN42
    Conserved Domains (3) summary
    PLN03218
    Location:49 → 455
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:368 → 395
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:434 → 481
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LSQ2.1

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