CDC48C cell division cycle 48C [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: CDC48C
Official Full Name: cell division cycle 48C
Primary source: TAIR:AT3G01610
Locus tag: AT3G01610
See related: Araport:AT3G01610
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: cell division cycle 48C; emb1354; embryo defective 1354; F4P13.15; F4P13_15
Summary: AAA-type ATPase - Over 90% homologous to CDC48a
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Genomic context

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See CDC48C in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 10

Sequence:: Chromosome: 3; NC_003074.8 (231610..235279)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001337349.1

Supported by ESTs:

NM_111027.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy	NAS Non-traceable Author Statement more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: cell division cycle 48C

NP_186810.2

cell division cycle 48C (CDC48C); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 65227 Blast hits to 39412 proteins in 3299 species: Archae - 1912; Bacteria - 27659; Metazoa - 8516; Fungi - 6329; Plants - 5583; Viruses - 58; Other Eukaryotes - 15170 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

231610..235279

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_111027.4 → NP_186810.2 cell division cycle 48C [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_186810.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8L769, Q9SS94

UniProtKB/TrEMBL

A0A178V5U0, A0A7G2EJ58

Conserved Domains (1) summary

TIGR01243
Location:223 → 808

CDC48; AAA family ATPase, CDC48 subfamily
NM_001337349.1 → NP_001326134.1 cell division cycle 48C [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1I9LNC6, A0A5S9X874, A0A654F4B7

Conserved Domains (1) summary

TIGR01243
Location:223 → 808

CDC48; AAA family ATPase, CDC48 subfamily