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ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821145, updated on 18-Sep-2024

Summary

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Official Full Name
ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein
Primary source
TAIR:AT3G03790
Locus tag
AT3G03790
See related
Araport:AT3G03790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20H23.18; F20H23_18
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Genomic context

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Location:
chromosome: 3
Exon count:
11
Sequence:
Chromosome: 3; NC_003074.8 (961750..968152)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene HSP20-like chaperones superfamily protein Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene methionine synthase 2 Neighboring gene syntaxin of plants 131 Neighboring gene O-fucosyltransferase family protein Neighboring gene SAUR-like auxin-responsive protein family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Profiling of the Receptor for Activated C Kinase 1a (RACK1a) interaction network in Arabidopsis thaliana. Guo J, et al. Biochem Biophys Res Commun, 2019 Dec 3. PMID 31606202
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001202873.1
NM_111250.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein
NP_001189802.1
  • ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1).
NP_187029.2
  • ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1); Has 47493 Blast hits to 19299 proteins in 916 species: Archae - 174; Bacteria - 5076; Metazoa - 23213; Fungi - 3118; Plants - 3847; Viruses - 203; Other Eukaryotes - 11862 (source: NCBI BLink).
NP_974213.1
  • ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    961750..968152
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202484.2 → NP_974213.1  ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974213.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9X946, F4J2C5
    Conserved Domains (4) summary
    COG5184
    Location:140 → 477
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    sd00045
    Location:29 → 59
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:29 → 126
    Ank_2; Ankyrin repeats (3 copies)
    cl28903
    Location:582 → 613
    BACK; BACK (BTB and C-terminal Kelch) domain

  2. NM_001202873.1 → NP_001189802.1  ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189802.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9X946, F4J2C4
    Conserved Domains (5) summary
    cd00204
    Location:29 → 137
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd14821
    Location:586 → 615
    SPOP_C_like; BACK-like Domain C-terminal to BTB in speckle-type POZ protein (SPOP) and similar proteins
    pfam00415
    Location:264 → 311
    RCC1; Regulator of chromosome condensation (RCC1) repeat
    pfam12796
    Location:29 → 126
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:29 → 59
    ANK; ANK repeat [structural motif]

  3. NM_111250.2 → NP_187029.2  ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187029.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J2C6, Q8GZ56
    Conserved Domains (5) summary
    cd00204
    Location:29 → 137
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd14821
    Location:583 → 612
    SPOP_C_like; BACK-like Domain C-terminal to BTB in speckle-type POZ protein (SPOP) and similar proteins
    pfam00415
    Location:261 → 308
    RCC1; Regulator of chromosome condensation (RCC1) repeat
    pfam12796
    Location:29 → 126
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:29 → 59
    ANK; ANK repeat [structural motif]
Nucleotide Protein
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