HSP20-like chaperones superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: HSP20-like chaperones superfamily protein
Primary source: TAIR:AT3G03773
Locus tag: AT3G03773
See related: Araport:AT3G03773
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 8

Sequence:: Chromosome: 3; NC_003074.8 (951628..954055)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The functional characterization of the two isoforms of p23 in Arabidopsis thaliana is reported, suggesting a key role of p23 in the regulation of root development. Arabidopsis p23 mutants show a short root length phenotype with a reduced meristem length.
Title: The co-chaperone p23 controls root development through the modulation of auxin distribution in the Arabidopsis root meristem.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001161117.1

Supported by ESTs:

NM_001337483.1

Supported by ESTs:

NM_148683.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables Hsp90 protein binding	IDA Inferred from Direct Assay more info	PubMed
enables protein-folding chaperone binding	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
involved_in chaperone cofactor-dependent protein refolding	IDA Inferred from Direct Assay more info	PubMed
acts_upstream_of_or_within negative regulation of cytokinin-activated signaling pathway	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within positive regulation of gene expression	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within regulation of auxin polar transport	IGI Inferred from Genetic Interaction more info	PubMed
involved_in response to heat	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within root meristem growth	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in cytoplasm	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info
part_of protein folding chaperone complex	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: HSP20-like chaperones superfamily protein

NP_001154589.1

HSP20-like chaperones superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: CS-like domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS domain (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT4G02450.2); Has 706 Blast hits to 706 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 339; Fungi - 125; Plants - 130; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).

NP_683525.2

HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: CS-like domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS domain (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT4G02450.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

951628..954055

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001161117.1 → NP_001154589.1 HSP20-like chaperones superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001154589.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9X8U2, F4J2B8

Conserved Domains (1) summary

cd06465
Location:59 → 165

p23_hB-ind1_like; p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) ...
NM_001337483.1 → NP_001326356.1 HSP20-like chaperones superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

Q6ID70
NM_148683.5 → NP_683525.2 HSP20-like chaperones superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_683525.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q6DSR5, Q6ID70

UniProtKB/TrEMBL

A0A178VFM3, A0A654F926

Conserved Domains (1) summary

cd06465
Location:5 → 111

p23_hB-ind1_like; p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) ...