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EF hand calcium-binding protein family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821161, updated on 18-Sep-2024

Summary

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Official Full Name
EF hand calcium-binding protein family
Primary source
TAIR:AT3G03000
Locus tag
AT3G03000
See related
Araport:AT3G03000
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13E7.5; F13E7_5
Summary
Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (677240..678180)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene MEIOTIC CONTROL OF CROSSOVERS1 Neighboring gene ncRNA Neighboring gene heat shock transcription factor A1E Neighboring gene Peptidyl-tRNA hydrolase II (PTH2) family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Vacuolar Na+/H+ antiporter cation selectivity is regulated by calmodulin from within the vacuole in a Ca2+- and pH-dependent manner. Yamaguchi T, et al. Proc Natl Acad Sci U S A, 2005 Nov 1. PMID 16249341, Free PMC Article
  2. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_111170.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of monoatomic ion transport IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in plant-type vacuole IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
EF hand calcium-binding protein family
NP_186950.1
  • EF hand calcium-binding protein family; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G32250.1); Has 24706 Blast hits to 18078 proteins in 1578 species: Archae - 2; Bacteria - 105; Metazoa - 9402; Fungi - 6368; Plants - 5242; Viruses - 0; Other Eukaryotes - 3587 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    677240..678180
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111170.2 → NP_186950.1  EF hand calcium-binding protein family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_186950.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M8U1
    UniProtKB/TrEMBL
    A0A178V6U2, A0A5S9X8M9
    Conserved Domains (1) summary
    PTZ00184
    Location:10 → 157
    PTZ00184; calmodulin; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M8U1.1

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